• Advanced Courses in Life Sciences

    Header of Geometric Morphometrics at Transmitting Science

Online Course – 9th Edition

3D GEOMETRIC MORPHOMETRICS

August 24th-28th, 2020

Geometric Morphometrics_transparente

Geometric Morphometrics

This course will be delivered ONLINE: 20 hours of online live lessons,  plus 15 hours of recorded classes and assignments. A good internet connection is required to follow the course.

3D Geometric MorphometricsCourse Overview

This course is entitled to teach the main concepts of shape analysis based on threedimensional landmark coordinates. In this course, you will learn to manipulate 3D models and use them to collect landmark data, take measurements, and to quantify and visualize the main differences in shape.

REQUIREMENTS

Graduate or postgraduate degree in Biomedical, Life or Earth Sciences, basic knowledge of statistics. Basic knowledge of Geometric Morphometrics is recommended.

All participants must have a personal computer (Windows), with webcam if possible, and a good internet connection.

Contact

courses@transmittingscience.com

LOCATION

This course will be delivered online.

Please check the schedule for the live online part, and be aware that it is GMT+1.

DATE

August 24th-28th, 2020

LANGUAGE

English

COURSE LENGTH & ECTS

35 hours on-site.

This course is equivalent to 2 ECTS (European Credit Transfer System) at the Life Science Zurich Graduate School.

The recognition of ECTS by other institutions depends on each university or school.

PLACES

Places are limited to 15 participants and will be occupied by strict registration order.

Participants who have completed the course will receive a certificate at the end of it.

Melissa Tallman instructor for Transmitting Science

Dr. Melissa Tallman

Grand Valley State University
United States of America

Program

  • Types of data acquisition.
    Collecting CT scans & Surface Scans.
    – Demonstration of Stratovan Checkpoint.

    Brief Review of Fundamentals of
    Morphometrics.
    – How to choose landmarks.
    – Generalized Procrustes Analysis.
    – Other types of alignment.
    – Thin plate spline warping.

    Processing Microscribe data.
    – Using DVLR to merge two views.
    – Using resample to resample a line.
    Using Landmark Editor to collect data on
    surfaces.
    – Sliding semi-landmarks (using R
    geomorph package).

    How to do a precision test on 3D data.

    Data exploration: PCA analyses.
    – Using MorphoJ.
    – Between-group PCAs.
    – PCAs in Procrustes form space.

    Visualizing shape change.
    – Using MorphoJ in conjunction with Landmark Editor.

    Landmark Editor.
    – Making calculations and visualizing shape
    changes in PCA morphospace.
    – Calculating PCA scores post hoc.

    Data exploration: Regressions.
    – Visualizing change that is associated with
    size (MorphoJ).

    Data exploration: PLS analyses.
    – Using MorphoJ to mean center (or not).
    – Visualizing shape change in Landmark
    editor.

    Data interpretations: Using mean
    configurations (PAST) and Procrustes
    distances.
    – Minimum spanning trees.
    – Variability within a sample (comparing fossil)

    Programs that we will use:
    – Stratovan Checkpoint (temporal licences
    will be provided during the course).
    – DVLR (free).
    – Landmark Editor (free).
    – MorphoJ (free).
    – PAST (free).
    – R (free, only for sliding semilandmarks, no
    previous knowledge is required).
    – Microsoft Excel.

Fees

  • Course Fee
  • Early bird (until June 30th, 2020):
  • 525 € *
    (420 € for Ambassador Institutions)
  • Regular (after June 30th, 2020):
  • 658 € *
    (526.4 € for Ambassador
    Institutions)
  • This includes course material (VAT included).
    * Participants from companies/industry will have an extra charge of 100 €.

You can check the list of Ambassador Institutions. If you want your institution to become a Transmitting Science Ambassador please contact us at communication@transmittingscience.com

Schedule

  • Monday to Friday:
    • 15:00 to 19:00 online live lessons (GMT+1).

The rest of the time will be taught with recorded classes and assignments, to be done between the live sessions.

Funding

Discounts are not cumulative and apply only on the Course Fee. We offer the possibility of paying in two instalments (contact courses@transmittingscience.com).

Former participants will have a 5 % discount on the Course Fee.

20 % discount on the Course Fee is offered for members of some organizations (Ambassador Institutions). If you want to apply to this discount please indicate it in the Registration form (proof will be asked later).

Unemployed scientists living in the country were the course will be held, as well as PhD students based in that country without any grant or scholarship to develop their PhD, could benefit from a 40 % discount on the Course Fee. If you want to ask for this discount, please contact the course coordinator. That would apply for a maximum of 2 places and they will be covered by strict inscription order.

Registration

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